WhatsHap
Supported Tool
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.
Description
The WhatsHap module parses results generated by
WhatsHap, and is currently restricted to the
output from whatshap stats --tsv.
File search patterns
whatshap/stats:
contents: "#sample\tchromosome\tfile_name\tvariants\tphased\tunphased\tsingletons"
num_lines: 1