Stacks

Description

Very important note

This module will only work with Stacks version 2.1 or greater. Furthermore, this module is designed to only parse some of the output from the denovo_map pipeline. If you are missing some functionality, please submit an issue on the MultiQC github page

File search patterns

stacks/gstacks:
  fn: gstacks.log.distribs
  contents: BEGIN effective_coverages_per_sample
stacks/populations:
  fn: populations.log.distribs
  contents: BEGIN missing_samples_per_loc_prefilters
stacks/sumstats:
  fn: "*.sumstats_summary.tsv"
  contents: "# Pop ID\tPrivate\tNum_Indv\tVar\tStdErr\tP\tVar"
  max_filesize: 1000000