Salmon
Supported Tool
Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.
Description
The Salmon module parses results generated by Salmon, a tool for quantifying the expression of transcripts using RNA-seq data.
The Salmon module parses meta_info.json, lib_format_counts.json and flenDist.txt files, if found.
Note
Note that meta_info.json must be within a directory called either aux_info or aux and will be ignored otherwise.
File search patterns
salmon/meta:
fn: meta_info.json
contents: salmon_version
num_lines: 10
max_filesize: 50000
salmon/lfc:
fn: lib_format_counts.json
salmon/fld:
fn: flenDist.txt