pycoQC
Supported Tool
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
Description
PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy,
but if needed it can also generate a summary file from basecalled fast5 files.
The package supports 1D and 1D2 runs generated with MinION, GridION and PromethION devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+.
File search patterns
pycoqc:
contents: '"pycoqc":'
num_lines: 2