Kallisto
Supported Tool
kallisto is a program for quantifying abundances of transcripts from RNA-Seq data.
Description
The Kallisto module parses logs generated by Kallisto, a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
Note - MultiQC parses the standard out from Kallisto, not any of its output files
(abundance.h5, abundance.tsv, and run_info.json). As such, you must capture the
Kallisto stdout to a file when running to use the MultiQC module.
File search patterns
kallisto:
contents: "[quant] finding pseudoalignments for the reads"