GffCompare
Supported Tool
A tool to compare, merge and annotate one or more GFF files with a reference annotation in GFF format.
Description
The program gffcompare can be used to compare, merge, annotate and estimate accuracy
of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF).
The Sensitivity / Precision values are displayed in a single plot, different loci levels can be switched by choosing a different dataset.
Please use gffcompare only with single samples.
Multi-Sample comparisons are not correctly rendered by this MultiQC module.
Note that exported data in multiqc_data/multiqc_gffcompare.{tsv,yaml,json} only works when
exporting with YAML or JSON - the default .tsv output will not contain any data.
Please use -k yaml or -k json to export in a structured format.
It is hoped to refactor this code in a future release - please submit a PR if you are interested.
File search patterns
gffcompare:
fn: "*.stats"
contents: "# gffcompare"
num_lines: 2