Freyja
Supported Tool
Freyja: Recover relative lineage abundances from mixed SARS-CoV-2 samples.
Description
Freyja is a tool to recover relative lineage abundances from mixed SARS-CoV-2 samples from a sequencing dataset and uses lineage-determining mutational “barcodes” derived from the UShER global phylogenetic tree to solve the constrained (unit sum, non-negative) de-mixing problem.
File search patterns
freyja:
fn: "*.tsv"
contents: summarized [
num_lines: 6