DeDup

Description

Improved Duplicate Removal for merged/collapsed reads in ancient DNA analysis

By default, tables show read counts in thousands. To customise this, you can set the following MultiQC config variables:

ancient_read_count_prefix: "K"
ancient_read_count_desc: "thousands"
ancient_read_count_multiplier: 0.001

File search patterns

bismark/dedup:
  fn: "*.deduplication_report.txt"
dedup:
  fn: "*dedup.json"
umitools/dedup:
  contents: "# output generated by dedup"
  num_lines: 3