Conpair
Supported Tool
Conpair estimates concordance and contamination for tumour–normal pairs
Description
Conpair is a fast and robust method dedicated for human tumour-normal studies to perform concordance verification (= samples coming from the same individual), as well as cross-individual contamination level estimation in whole-genome and whole-exome sequencing experiments.
File search patterns
conpair/concordance:
contents: markers (coverage per marker threshold
num_lines: 3
conpair/contamination:
contents: "Tumor sample contamination level: "
num_lines: 3