Cluster Flow

Description

Cluster Flow is a simple and flexible bioinformatics pipeline tool. It’s designed to be quick and easy to install, with flexible configuration and simple customization.

Cluster Flow easy enough to set up and use for non-bioinformaticians (given a basic knowledge of the command line), and it’s simplicity makes it great for low to medium throughput analyses.

The MultiQC module for Cluster Flow parses *_clusterflow.txt logs and finds consensus commands executed by modules in each pipeline run.

The Cluster Flow *.run files are also parsed and pipeline information shown (some basic statistics plus the pipeline steps / params used).

File search patterns

clusterflow/logs:
  fn: "*_clusterFlow.txt"
  shared: true
clusterflow/runfiles:
  fn: "*.run"
  contents: Cluster Flow Run File
  num_lines: 2