AfterQC
Supported Tool
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.
Description
The AfterQC module parses results generated by AfterQC. AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.
File search patterns
afterqc:
fn: "*.json"
contents: allow_mismatch_in_poly
num_lines: 10000