HiC-Pro
Supported Tool
HiC-Pro is an optimized and flexible pipeline for Hi-C data processing.
Description
The HiC-Pro module parses results generated by HiC-Pro, a tool for efficient processing and quality control of Hi-C data.
Please note - because this module shares sample identifiers across multiple files,
the --fn_as_s_name
/ config.use_filename_as_sample_name
functionality has been disabled and has no effect.
File search patterns
hicpro/mmapstat:
fn: "*mapstat"
contents: total_R
num_lines: 10
hicpro/mpairstat:
fn: "*pairstat"
contents: Total_pairs_processed
num_lines: 10
hicpro/mergestat:
fn: "*.mergestat"
contents: valid_interaction
num_lines: 10
hicpro/mRSstat:
fn: "*RSstat"
contents: Valid_interaction_pairs
hicpro/assplit:
fn: "*assplit.stat"